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Creators/Authors contains: "Taylor, Stephen"

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  1. Rensing, Christopher (Ed.)
    Soil microbial fuel cells (SMFCs) function as bioelectrochemical energy harvesters that convert electrons stored in soil organic matter into useful electrical energy. Broadly, an SMFC comprises three essential components: an anode buried in the soil (the negative terminal), a colony of exoelectrogenic microorganisms residing on this anode, and a cathode (the positive terminal). As the exoelectrogens respire, they release electrons to the anode, which acts as an external receptor. These released electrons then flow through a load (e.g. a resistor), connecting the anode and cathode. Though minuscule, the electrical power produced by SMFCs has a number of potential applications such as sustaining low-power embedded electronics, pollutant remediation, or as a bio-sensing proxy for soil qualities and microbial activity. This discussion aims to emphasize the potential of SMFCs in addressing real-world environmental issues and to generate interest in the larger scientific community for broad interdisciplinary research efforts, particularly in field deployments. 
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  2. Abstract While supermassive black hole (SMBH) binaries are not the only viable source for the low-frequency gravitational wave background (GWB) signal evidenced by the most recent pulsar timing array (PTA) data sets, they are expected to be the most likely. Thus, connecting the measured PTA GWB spectrum and the underlying physics governing the demographics and dynamics of SMBH binaries is extremely important. Previously, Gaussian processes (GPs) and dense neural networks have been used to make such a connection by being built as conditional emulators; their input is some selected evolution or environmental SMBH binary parameters and their output is the emulated mean and standard deviation of the GWB strain ensemble distribution over many Universes. In this paper, we use a normalizing flow (NF) emulator that is trained on the entirety of the GWB strain ensemble distribution, rather than only mean and standard deviation. As a result, we can predict strain distributions that mirror underlying simulations very closely while also capturing frequency covariances in the strain distributions as well as statistical complexities such as tails, non-Gaussianities, and multimodalities that are otherwise not learnable by existing techniques. In particular, we feature various comparisons between the NF-based emulator and the GP approach used extensively in past efforts. Our analyses conclude that the NF-based emulator not only outperforms GPs in the ease and computational cost of training but also outperforms in the fidelity of the emulated GWB strain ensemble distributions. 
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    Free, publicly-accessible full text available March 19, 2026
  3. Free, publicly-accessible full text available April 1, 2026
  4. Protein–protein and protein–water hydrogen bonding interactions play essential roles in the way a protein passes through the transition state during folding or unfolding, but the large number of these interactions in molecular dynamics (MD) simulations makes them difficult to analyze. Here, we introduce a state space representation and associated “rarity” measure to identify and quantify transition state passage (transit) events. Applying this representation to a long MD simulation trajectory that captured multiple folding and unfolding events of the GTT WW domain, a small protein often used as a model for the folding process, we identified three transition categories: Highway (faster), Meander (slower), and Ambiguous (intermediate). We developed data sonification and visualization tools to analyze hydrogen bond dynamics before, during, and after these transition events. By means of these tools, we were able to identify characteristic hydrogen bonding patterns associated with “Highway” versus “Meander” versus “Ambiguous” transitions and to design algorithms that can identify these same folding pathways and critical protein–water interactions directly from the data. Highly cooperative hydrogen bonding can either slow down or speed up transit. Furthermore, an analysis of protein–water hydrogen bond dynamics at the surface of WW domain shows an increase in hydrogen bond lifetime from folded to unfolded conformations with Ambiguous transitions as an outlier. In summary, hydrogen bond dynamics provide a direct window into the heterogeneity of transits, which can vary widely in duration (by a factor of 10) due to a complex energy landscape. 
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  5. Human-caused climate degradation and the explosion of electronic waste have pushed the computing community to explore fundamental alternatives to the current battery-powered, over-provisioned ubiquitous computing devices that need constant replacement and recharging. Soil Microbial Fuel Cells (SMFCs) offer promise as a renewable energy source that is biocompatible and viable in difficult environments where traditional batteries and solar panels fall short. However, SMFC development is in its infancy, and challenges like robustness to environmental factors and low power output stymie efforts to implement real-world applications in terrestrial environments. This work details a 2-year iterative process that uncovers barriers to practical SMFC design for powering electronics, which we address through a mechanistic understanding of SMFC theory from the literature. We present nine months of deployment data gathered from four SMFC experiments exploring cell geometries, resulting in an improved SMFC that generates power across a wider soil moisture range. From these experiments, we extracted key lessons and a testing framework, assessed SMFC's field performance, contextualized improvements with emerging and existing computing systems, and demonstrated the improved SMFC powering a wireless sensor for soil moisture and touch sensing. We contribute our data, methodology, and designs to establish the foundation for a sustainable, soil-powered future. 
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  6. Abstract Statistical anisotropy in the nanohertz-frequency gravitational wave background (GWB) is expected to be detected by pulsar timing arrays (PTAs) in the near future. By developing a frequentist statistical framework that intrinsically restricts the GWB power to be positive, we establish scaling relations for multipole-dependent anisotropy decision thresholds that are a function of the noise properties, timing baselines, and cadences of the pulsars in a PTA. We verify that (i) a larger number of pulsars, and (ii) factors that lead to lower uncertainty on spatial cross-correlation measurements between pulsars, lead to a higher overall GWB signal-to-noise ratio, and lower anisotropy decision thresholds with which to reject the null hypothesis of isotropy. Using conservative simulations of realistic NANOGrav data sets, we predict that an anisotropic GWB with angular power C l =1 > 0.3 C l =0 may be sufficient to produce tension with isotropy at the p = 3 × 10 −3 (∼3 σ ) level in near-future NANOGrav data with a 20 yr baseline. We present ready-to-use scaling relationships that can map these thresholds to any number of pulsars, configuration of pulsar noise properties, or sky coverage. We discuss how PTAs can improve the detection prospects for anisotropy, as well as how our methods can be adapted for more versatile searches. 
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  7. ABSTRACT Time-domain data sets of many varieties can be prone to statistical outliers that result from instrumental or astrophysical anomalies. These can impair searches for signals within the time series and lead to biased parameter estimation. Versatile outlier mitigation methods tuned toward multimessenger time-domain searches for supermassive binary black holes have yet to be fully explored. In an effort to perform robust outlier isolation with low computational costs, we propose a Gibbs sampling scheme. This provides structural simplicity to outlier modelling and isolation, as it requires minimal modifications to adapt to time-domain modelling scenarios with pulsar-timing array or photometric data. We robustly diagnose outliers present in simulated pulsar-timing data sets, and then further apply our methods to pulsar J1909−3744 from the NANOGrav 9-year Data set. We also explore the periodic binary-AGN candidate PG1302−102 using data sets from the Catalina Real-time Transient Survey, All-Sky Automated Survey for Supernovae, and the Lincoln Near-Earth Asteroid Research. We present our findings and outline future work that could improve outlier modelling and isolation for multimessenger time-domain searches. 
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